SiFT: uncovering hidden biological processes by probabilistic filtering of single-cell data
Z. Piran & M. Nitzan. Nature Communications 15.1 (2024): 760. [Paper]

Disentanglement of single-cell data with biolord
Z. Piran, N. Cohen, Y. Hoshen & M. Nitzan. Nature Biotechnology (2024): 1-6. [Paper]

Mapping cells through time and space with moscot
D. Klein*, G. Palla*, M. Lange*, M. Klein*, Z. Piran*, M. Gander, L. Meng-Papaxanthos, M. Sterr, A. Bastidas-Ponce, M. Tarquis-Medina, H. Lickert, M. Bakhti, M. Nitzan, M. Cuturi & F. J. Theis. bioRxiv (2023). *equal contribution. [Preprint]

Mapping lineage-traced cells across time points with moslin
M. Lange*, Z. Piran*, M. Klein*, B. Spanjaard*, D. Klein, J. P. Junker, F. J. Theis, & M. Nitzan. bioRxiv (2023). *equal contribution. [Preprint]

Phase2vec: Dynamical systems embedding with a physics-informed convolutional network
M. Ricci, N. Moriel, Z. Piran & M. Nitzan. Eleventh International Conference on Learning Representations (2023). [Paper]

The Origin of Binary Black Holes Mergers
Z. Piran & T. Piran. The Astrophysical Journal (2020). [Paper]

The Dual Information Bottleneck
Z. Piran, R. Shwartz-Ziv, & N. Tishby. arXiv (2020). [Preprint]