Publications

Systema: a framework for evaluating genetic perturbation response prediction beyond systematic variation
R. Viñas Torné, M. Wiatrak, Z. Piran, S. Fan, L. Jiang, S. A. Teichmann, M. Nitzan & M. Brbić
Nature Biotechnology (2025)
Paper
Enhancing swarms' durability to threats via graph signal processing and graph-neural-network-based generative modeling
J. Karin*, Z. Piran* & M. Nitzan
Physical Review E (2025)
Paper
Mapping cells through time and space with moscot
D. Klein*, G. Palla*, M. Lange*, M. Klein*, Z. Piran*, M. Gander, ..., H. Lickert, M. Bakhti, M. Nitzan, M. Cuturi & F. J. Theis
Nature (2025)
Paper
TRENDy: Temporal Regression of Effective Nonlinear Dynamics
M. Ricci, G. Pelc, Z. Piran, N. Moriel & M. Nitzan
The Thirteenth International Conference on Learning Representations (2025)
Paper
Mapping lineage-traced cells across time points with moslin
M. Lange*, Z. Piran*, M. Klein*, B. Spanjaard*, D. Klein, J. P. Junker, F. J. Theis, & M. Nitzan
Genome Biology (2024)
Paper
Contrasting Multiple Representations with the Multi-Marginal Matching Gap
Z. Piran*, M. Klein*, J. Thornton & M. Cuturi
International Conference on Machine Learning (2024)
Paper
Disentanglement of single-cell data with biolord
Z. Piran, N. Cohen, Y. Hoshen & M. Nitzan
Nature Biotechnology (2024)
Paper
Identifying maximally informative signal-aware representations of single-cell data using the Information Bottleneck
S. Dubnov, Z. Piran, H. Soreq & M. Nitzan
bioRxiv (2024)
Preprint
SiFT: uncovering hidden biological processes by probabilistic filtering of single-cell data
Z. Piran & M. Nitzan
Nature Communications (2024)
Paper
Phase2vec: Dynamical systems embedding with a physics-informed convolutional network
M. Ricci, N. Moriel, Z. Piran & M. Nitzan
The Eleventh International Conference on Learning Representations (2023)
Paper
The Origin of Binary Black Holes Mergers
Z. Piran & T. Piran
The Astrophysical Journal (2020)
Paper
The Dual Information Bottleneck
Z. Piran, R. Shwartz-Ziv & N. Tishby
arXiv (2020)
Preprint